Transcript: ENST00000558597.1 IRX5-004

Description

iroquois homeobox 5 [Source:HGNC Symbol;Acc:14361]

Gene Synonyms

HMMS, IRX-2a, IRX2A, IRXB2

Location

About this transcript

This transcript has 2 exons, is annotated with 14 domains and features, is associated with 1496 variant alleles and maps to 356 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394636.4	IRX5-001	2401	483aa	ENSP00000378132.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10751	P78411	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320990.5	IRX5-002	2061	482aa	ENSP00000316250.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58462	P78411	NM_005853.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558597.1	IRX5-004	1825	417aa	ENSP00000453725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P78411	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560154.1	IRX5-003	879	263aa	ENSP00000453660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YML8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,825 bps, Translation length: 417 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P78411

Version

ENST00000558597.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417441 (version 1)

Annotation Attributes

retained intron first [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.