Transcript: ENST00000564439.1 RPL4-011

Description

ribosomal protein L4 [Source:HGNC Symbol;Acc:10353]

Gene Synonyms

L4, RPL1, U16, U18A, U18B, U18C

Location

Chromosome 15: 66,793,737-66,797,183 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 2066 variant alleles and maps to 406 oligo probes.

Gene

This transcript is a product of gene ENSG00000174444.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307961.6	RPL4-001	2767	427aa	ENSP00000311430.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10218	H3BM89 P36578	NM_000968.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568588.1	RPL4-020	1864	333aa	ENSP00000454281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BM89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569696.1	RPL4-010	569	171aa	ENSP00000457442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BU31	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569438.1	RPL4-012	565	170aa	ENSP00000457268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTP7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564517.1	RPL4-019	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563473.1	RPL4-016	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565723.1	RPL4-018	408	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567229.1	RPL4-005	2003	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561775.1	RPL4-006	1396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564647.1	RPL4-015	1110	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566039.1	RPL4-007	1099	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566624.1	RPL4-009	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566622.1	RPL4-013	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564744.1	RPL4-017	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566491.1	RPL4-008	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564439.1	RPL4-011	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561554.1	RPL4-014	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 582 bps,

Version

ENST00000564439.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420744 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000564439.1 RPL4-011

Summary