Transcript: ENST00000397809.5 CCDC41-003

Description

coiled-coil domain containing 41 [Source:HGNC Symbol;Acc:17966]

Gene Synonyms

CEP83, Cep83, NY-REN-58

Location

Chromosome 12: 94,701,472-94,853,728 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 62088 variant alleles and maps to 629 oligo probes.

Gene

This transcript is a product of gene ENSG00000173588.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397809.5	CCDC41-003	3773	701aa	ENSP00000380911.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41820	H0YHH5 J3KNW7	NM_016122.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339839.5	CCDC41-001	3130	701aa	ENSP00000344655.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41820	H0YHH5 J3KNW7	NM_001042399.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547575.1	CCDC41-002	3122	352aa	ENSP00000448913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYN8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397807.2	CCDC41-201	2339	568aa	ENSP00000380909.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y592	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552632.1	CCDC41-006	705	165aa	ENSP00000447094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YHH5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546527.1	CCDC41-013	644	2aa	ENSP00000447449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547232.1	CCDC41-004	2166	568aa	ENSP00000447783.1	Nonsense mediated decay		Q9Y592	-	-
ENST00000549352.1	CCDC41-005	861	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546587.1	CCDC41-008	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546783.1	CCDC41-007	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551250.1	CCDC41-010	523	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550328.1	CCDC41-009	241	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551596.1	CCDC41-012	631	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551078.1	CCDC41-011	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 3,773 bps, Translation length: 701 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS41820

Version

ENST00000397809.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000408147 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000397809.5 CCDC41-003

Summary