Transcript: ENST00000308388.6 GMPPB-003

Description

GDP-mannose pyrophosphorylase B [Source:HGNC Symbol;Acc:22932]

Gene Synonyms

AMIGO-3, KIAA1851, MDDGA14, MDDGB14, MDDGC14

Location

Chromosome 3: 49,758,909-49,761,382 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 1684 variant alleles and maps to 340 oligo probes.

Gene

This transcript is a product of gene ENSG00000173540.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308375.6	GMPPB-002	3217	387aa	ENSP00000309092.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2802	Q9Y5P6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480687.1	GMPPB-001	6108	360aa	ENSP00000418565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2803	Q9Y5P6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308388.6	GMPPB-003	1582	360aa	ENSP00000311130.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2803	Q9Y5P6	NM_021971.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481959.1	GMPPB-004	944	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495627.1	GMPPB-005	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,582 bps, Translation length: 360 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5P6

CCDS

This transcript is a member of the Human CCDS set: CCDS2803

Version

ENST00000308388.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000350293 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000308388.6 GMPPB-003

Summary