Transcript: ENST00000311946.7 NIPAL4-001

Description

NIPA-like domain containing 4 [Source:HGNC Symbol;Acc:28018]

Gene Synonyms

ARCI6, ICHN, ICHTHYIN, ICHYN, NIPA4

Location

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 6203 variant alleles and maps to 333 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311946.7	NIPAL4-001	3274	466aa	ENSP00000311687.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47328	Q0D2K0	NM_001099287.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435489.2	NIPAL4-002	1600	447aa	ENSP00000406456.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54944	Q0D2K0	NM_001172292.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519150.1	NIPAL4-005	788	132aa	ENSP00000430810.1	Nonsense mediated decay		H0YC31	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000521390.1	NIPAL4-003	1151	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519946.1	NIPAL4-006	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,274 bps, Translation length: 466 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0D2K0

CCDS

This transcript is a member of the Human CCDS set: CCDS47328

Version

ENST00000311946.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000373789 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.