Transcript: ENST00000338876.4 HSFY1-003

Description

heat shock transcription factor, Y-linked 1 [Source:HGNC Symbol;Acc:18568]

Gene Synonyms

HSF2L, HSFY

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 120 variant alleles and maps to 582 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307393.2	HSFY1-001	1444	401aa	ENSP00000303599.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35475	Q96LI6	NM_033108.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382856.2	HSFY1-004	1374	214aa	ENSP00000372307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96LI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309834.4	HSFY1-002	1038	203aa	ENSP00000311166.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14790	Q96LI6	NM_152584.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338876.4	HSFY1-003	1476	214aa	ENSP00000342302.4	Nonsense mediated decay		Q96LI6	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 1,476 bps, Translation length: 214 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96LI6

Version

ENST00000338876.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000100038 (version 2)