Transcript: ENST00000479319.1 FRMD5-007

Description

FERM domain containing 5 [Source:HGNC Symbol;Acc:28214]

Gene Synonyms

MGC14161

Location

Chromosome 15: 44,194,112-44,202,125 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 3531 variant alleles and maps to 92 oligo probes.

Gene

This transcript is a product of gene ENSG00000171877.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000417257.1	FRMD5-001	5011	570aa	ENSP00000403067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10107	A8K1U8 Q7Z6J6	NM_032892.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402883.1	FRMD5-009	4091	517aa	ENSP00000384142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MC67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484674.1	FRMD5-005	2319	414aa	ENSP00000452968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KVN9 H0YKW6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449926.1	FRMD5-006	2042	474aa	ENSP00000399684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5N1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558108.2	FRMD5-012	702	178aa	ENSP00000454031.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNI9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421674.1	FRMD5-003	2778	123aa	ENSP00000401635.1	Nonsense mediated decay		F8WEJ8	-	-
ENST00000458630.1	FRMD5-004	2628	119aa	ENSP00000404496.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000451277.1	FRMD5-010	1994	216aa	ENSP00000392786.1	Nonsense mediated decay		F8WCI0	-	-
ENST00000473965.1	FRMD5-008	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479319.1	FRMD5-007	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 519 bps,

Version

ENST00000479319.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000133885 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000479319.1 FRMD5-007

Summary