Transcript: ENST00000553936.1 GPHN-010

Description

gephyrin [Source:HGNC Symbol;Acc:15465]

Gene Synonyms

GEPH, GPH, GPHRYN, HKPX1, KIAA1385, MOCODC

Location

Chromosome 14: 66,975,234-67,382,751 forward strand.

About this transcript

This transcript has 7 exons, is associated with 179398 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000171723.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000478722.1	GPHN-006	4297	769aa	ENSP00000417901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9777	Q9NQX3	NM_020806.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315266.5	GPHN-003	4193	736aa	ENSP00000312771.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32103	Q9NQX3	NM_001024218.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543237.1	GPHN-007	2459	782aa	ENSP00000438404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H039	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000305960.9	GPHN-201	2393	705aa	ENSP00000303019.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7D6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000459628.1	GPHN-004	1723	380aa	ENSP00000452220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V582	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555456.1	GPHN-014	841	280aa	ENSP00000450706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ30	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000555503.1	GPHN-017	655	201aa	ENSP00000452009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJR5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556240.1	GPHN-019	404	60aa	ENSP00000450442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000553936.1	GPHN-010	574	39aa	ENSP00000451725.1	Nonsense mediated decay		G3V4D2	-	-
ENST00000555668.1	GPHN-011	550	49aa	ENSP00000451935.1	Nonsense mediated decay		G3V4R0	-	-
ENST00000556633.1	GPHN-013	512	50aa	ENSP00000451056.1	Nonsense mediated decay		G3V355	-	-
ENST00000557654.1	GPHN-012	503	49aa	ENSP00000451790.1	Nonsense mediated decay		G3V4R0	-	-
ENST00000544752.2	GPHN-008	2514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556020.1	GPHN-009	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555527.1	GPHN-016	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557678.1	GPHN-018	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556501.1	GPHN-015	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 574 bps, Translation length: 39 residues

Version

ENST00000553936.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412381 (version 1)

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Transcript: ENST00000553936.1 GPHN-010

Summary