Transcript: ENST00000396383.1 TSEN34-003

Description

TSEN34 tRNA splicing endonuclease subunit [Source:HGNC Symbol;Acc:15506]

Gene Synonyms

LENG5, PCH2C, SEN34, SEN34L

Location

Chromosome 19: 54,694,582-54,697,521 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 2228 variant alleles and maps to 341 oligo probes.

Gene

This transcript is a product of gene ENSG00000170892.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396383.1	TSEN34-003	1548	310aa	ENSP00000379667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42609	B0V3J0 Q9BSV6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302937.4	TSEN34-001	1424	310aa	ENSP00000305524.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42609	B0V3J0 Q9BSV6	NM_024075.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396388.2	TSEN34-004	1349	310aa	ENSP00000379671.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42609	B0V3J0 Q9BSV6	NM_001077446.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429671.2	TSEN34-201	1087	312aa	ENSP00000397402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0V3J0 E7EQB3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455798.1	TSEN34-006	956	242aa	ENSP00000400743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0V3J0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000456872.1	TSEN34-005	853	251aa	ENSP00000408689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A9C4B9 B0V3J0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000496583.1	TSEN34-002	2372	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,548 bps, Translation length: 310 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BSV6

CCDS

This transcript is a member of the Human CCDS set: CCDS42609

Version

ENST00000396383.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000142200 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396383.1 TSEN34-003

Summary