Transcript: ENST00000524347.1 SGCD-004

Description

sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10807]

Gene Synonyms

35DAG, CMD1L, DAGD, LGMD2F, SG-delta, SGCDP, SGD

Location

Chromosome 5: 155,753,958-156,016,244 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 116795 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSG00000170624.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337851.4	SGCD-002	1606	290aa	ENSP00000338343.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47325	Q92629	NM_000337.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435422.3	SGCD-001	9755	289aa	ENSP00000403003.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47327	Q92629	NM_001128209.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447401.1	SGCD-201	1571	256aa	ENSP00000408324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47326	Q92629	NM_172244.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517913.1	SGCD-003	1412	256aa	ENSP00000429378.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47326	Q92629	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524347.1	SGCD-004	739	82aa	ENSP00000430794.1	Nonsense mediated decay		E5RI34	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 739 bps, Translation length: 82 residues

Version

ENST00000524347.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373513 (version 1)

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Transcript: ENST00000524347.1 SGCD-004

Summary