Transcript: ENST00000478494.1 FAM161A-009

Description

family with sequence similarity 161, member A [Source:HGNC Symbol;Acc:25808]

Gene Synonyms

FLJ13305, RP28

Location

Chromosome 2: 62,054,239-62,063,619 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 4235 variant alleles and maps to 217 oligo probes.

Gene

This transcript is a product of gene ENSG00000170264.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000404929.1	FAM161A-005	3762	716aa	ENSP00000385158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56120	Q3B820	NM_001201543.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405894.3	FAM161A-001	3684	660aa	ENSP00000385893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42687	Q3B820	NM_032180.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418113.1	FAM161A-004	4027	601aa	ENSP00000416861.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000456262.1	FAM161A-002	3579	142aa	ENSP00000396105.1	Nonsense mediated decay		F8WCZ8	-	-
ENST00000307507.3	FAM161A-003	1897	75aa	ENSP00000303170.3	Nonsense mediated decay		F8W731	-	-
ENST00000496369.1	FAM161A-008	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478494.1	FAM161A-009	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 630 bps,

Version

ENST00000478494.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000330433 (version 1)

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Transcript: ENST00000478494.1 FAM161A-009

Summary