Transcript: ENST00000560649.1 AVEN-003

Description

apoptosis, caspase activation inhibitor [Source:HGNC Symbol;Acc:13509]

Gene Synonyms

PDCD12

Location

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 5454 variant alleles and maps to 87 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306730.3	AVEN-001	1605	362aa	ENSP00000306822.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10030	Q9NQS1	NM_020371.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560649.1	AVEN-003	284	59aa	ENSP00000452906.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558136.1	AVEN-002	453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 284 bps, Translation length: 59 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000560649.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417958 (version 1)

Annotation Attributes

dotter confirmed [Definitions]