Transcript: ENST00000529851.1 APLF-006

Description

aprataxin and PNKP like factor [Source:HGNC Symbol;Acc:28724]

Gene Synonyms

APFL, C2orf13, MGC47799, PALF, XIP1, Xip1

Location

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 48340 variant alleles and maps to 470 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303795.4	APLF-001	3847	511aa	ENSP00000307004.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1888	Q8IW19	NM_173545.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445692.1	APLF-004	3906	280aa	ENSP00000393403.1	Nonsense mediated decay		F8WET0	-	-
ENST00000529851.1	APLF-006	2863	185aa	ENSP00000432297.1	Nonsense mediated decay		E9PRH6	-	-
ENST00000471727.1	APLF-002	1633	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488585.1	APLF-005	633	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 2,863 bps, Translation length: 185 residues

Version

ENST00000529851.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394759 (version 1)