Transcript: ENST00000522911.1 SDC2-006

Description

syndecan 2 [Source:HGNC Symbol;Acc:10659]

Gene Synonyms

CD362, HSPG, HSPG1, SYND2, fibroglycan

Location

Chromosome 8: 97,506,236-97,621,871 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 49951 variant alleles and maps to 172 oligo probes.

Gene

This transcript is a product of gene ENSG00000169439.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000302190.4	SDC2-001	3751	201aa	ENSP00000307046.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6272	B4DT61 E5RHU3 E5RJB8 E9PBI9 P34741	NM_002998.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518385.1	SDC2-002	1583	165aa	ENSP00000429045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT61 E7ESK6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519914.1	SDC2-003	1318	172aa	ENSP00000428256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT61 E5RHU3 E5RJB8 E9PBI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522911.1	SDC2-006	677	172aa	ENSP00000427784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT61 E5RHU3 E5RJB8 E9PBI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523877.1	SDC2-005	621	145aa	ENSP00000429662.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHU3 E5RJB8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521590.1	SDC2-004	507	137aa	ENSP00000429121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJB8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520233.1	SDC2-008	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519587.1	SDC2-007	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 677 bps, Translation length: 172 residues

Version

ENST00000522911.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000379753 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000522911.1 SDC2-006

Summary