Transcript: ENST00000479712.1 UPF3A-009

Description

UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:HGNC Symbol;Acc:20332]

Gene Synonyms

HUPF3A, RENT3A, UPF3

Location

Chromosome 13: 115,051,849-115,057,219 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2682 variant alleles and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSG00000169062.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375299.3	UPF3A-001	2378	476aa	ENSP00000364448.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9543	B3KUE7 Q9H1J1	NM_023011.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000351487.5	UPF3A-010	2235	443aa	ENSP00000329592.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9544	B3KUE7 Q9H1J1	NM_080687.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475218.2	UPF3A-002	1791	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480362.1	UPF3A-003	965	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493727.1	UPF3A-004	937	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474056.1	UPF3A-007	748	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484246.1	UPF3A-005	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481131.1	UPF3A-008	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492270.1	UPF3A-006	494	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479712.1	UPF3A-009	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 423 bps,

Version

ENST00000479712.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000045976 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000479712.1 UPF3A-009

Summary