Transcript: ENST00000519937.2 SFTPB-001

Description

surfactant protein B [Source:HGNC Symbol;Acc:10801]

Gene Synonyms

PSP-B, SFTB3, SFTP3, SMDP1, SP-B

Location

Chromosome 2: 85,884,437-85,895,326 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 26 domains and features, is associated with 5793 variant alleles and maps to 809 oligo probes.

Gene

This transcript is a product of gene ENSG00000168878.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393822.3	SFTPB-202	3664	393aa	ENSP00000377409.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1983	D6W5L6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342375.3	SFTPB-201	3664	381aa	ENSP00000345161.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P07988	NM_198843.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519937.2	SFTPB-001	3554	381aa	ENSP00000428719.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P07988	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409383.1	SFTPB-003	1867	393aa	ENSP00000386346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1983	D6W5L6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428225.1	SFTPB-002	1743	374aa	ENSP00000415347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494165.1	SFTPB-007	532	92aa	ENSP00000476194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473692.1	SFTPB-005	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491167.1	SFTPB-006	268	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,554 bps, Translation length: 381 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P07988

Version

ENST00000519937.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000252499 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000519937.2 SFTPB-001

Summary