Transcript: ENST00000515058.1 GDNF-003

Description

glial cell derived neurotrophic factor [Source:HGNC Symbol;Acc:4232]

Gene Synonyms

ATF1, ATF2, HFB1-GDNF, HSCR3

Location

Chromosome 5: 37,815,753-37,839,788 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 9911 variant alleles and maps to 261 oligo probes.

Gene

This transcript is a product of gene ENSG00000168621.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427982.1	GDNF-004	856	228aa	ENSP00000409007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54845	P39905	NM_001190468.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000326524.2	GDNF-001	3810	211aa	ENSP00000317145.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3922	P39905	NM_000514.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344622.4	GDNF-201	3655	185aa	ENSP00000339703.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3923	P39905	NM_199231.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381826.4	GDNF-002	778	202aa	ENSP00000371248.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54846	P39905	NM_001190469.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515058.1	GDNF-003	764	185aa	ENSP00000425928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3923	P39905	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502572.1	GDNF-005	306	61aa	ENSP00000423557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P39905	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510177.1	GDNF-006	295	61aa	ENSP00000424592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P39905	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 764 bps, Translation length: 185 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P39905

CCDS

This transcript is a member of the Human CCDS set: CCDS3923

Version

ENST00000515058.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367336 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000515058.1 GDNF-003

Summary