Transcript: ENST00000606893.1 CDC40-007

Description

cell division cycle 40 [Source:HGNC Symbol;Acc:17350]

Gene Synonyms

EHB3, FLJ10564, PRP17, PRPF17

Location

Chromosome 6: 110,501,344-110,551,536 forward strand.

About this transcript

This transcript has 15 exons, is associated with 19315 variant alleles and maps to 606 oligo probes.

Gene

This transcript is a product of gene ENSG00000168438.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368932.1	CDC40-005	3927	579aa	ENSP00000357928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5081	O60508 Q5SRM9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000307731.1	CDC40-201	3848	579aa	ENSP00000304370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5081	O60508 Q5SRM9	NM_015891.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368930.1	CDC40-001	1977	539aa	ENSP00000357926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SRM9 Q5SRN1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445340.2	CDC40-006	357	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000453107.1	CDC40-003	306	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000606893.1	CDC40-007	3372	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000431461.1	CDC40-004	400	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 0, Transcript length: 3,372 bps,

Version

ENST00000606893.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000470493 (version 1)

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Transcript: ENST00000606893.1 CDC40-007

Summary