Transcript: ENST00000495394.1 RPSA-004

Description

ribosomal protein SA [Source:HGNC Symbol;Acc:6502]

Gene Synonyms

37LRP, 67LR, ACA6, E2, E2-1, LAMBR, LAMR1, LBP, LBP/p40, LRP, LRP/LR, NEM/1CHD4, RNE2, RNU108, SA, lamR, p40

Location

Chromosome 3: 39,451,750-39,453,925 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1097 variant alleles and maps to 674 oligo probes.

Gene

This transcript is a product of gene ENSG00000168028.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301821.6	RPSA-001	1171	295aa	ENSP00000346067.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2686	C9J9K3 P08865	NM_002295.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443003.1	RPSA-002	1032	300aa	ENSP00000389351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P08865	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458478.1	RPSA-008	874	263aa	ENSP00000410848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9K3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000444512.1	RPSA-009	701	90aa	ENSP00000396716.1	Nonsense mediated decay		F8WD59	-	-
ENST00000478027.1	RPSA-003	894	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490490.1	RPSA-010	702	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495394.1	RPSA-004	2058	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475346.1	RPSA-006	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477325.1	RPSA-005	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487876.1	RPSA-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,058 bps,

Version

ENST00000495394.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000343657 (version 1)

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Transcript: ENST00000495394.1 RPSA-004

Summary