Transcript: ENST00000559720.1 B2M-002

Description

beta-2-microglobulin [Source:HGNC Symbol;Acc:914]

Location

Chromosome 15: 45,003,685-45,009,963 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 3491 variant alleles and maps to 672 oligo probes.

Gene

This transcript is a product of gene ENSG00000166710.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000558401.1	B2M-001	1715	119aa	ENSP00000452780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10113	A6XND9 H0YLF3 P61769 Q9UM88	NM_004048.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559916.1	B2M-006	1081	119aa	ENSP00000453350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10113	A6XND9 H0YLF3 P61769 Q9UM88	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544417.1	B2M-201	1027	122aa	ENSP00000437604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6I0 Q9UM88	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559720.1	B2M-002	1220	122aa	ENSP00000453023.1	Nonsense mediated decay		F5H6I0 Q9UM88	-	-
ENST00000349264.6	B2M-007	732	57aa	ENSP00000340858.6	Nonsense mediated decay		J3KNU0	-	-
ENST00000561139.1	B2M-011	717	71aa	ENSP00000453186.1	Nonsense mediated decay		H0YLF3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561424.1	B2M-013	604	119aa	ENSP00000453191.1	Nonsense mediated decay	CCDS10113	A6XND9 H0YLF3 P61769 Q9UM88	-	-
ENST00000557901.1	B2M-003	407	51aa	ENSP00000452861.1	Nonsense mediated decay		Q16446	-	-
ENST00000559220.1	B2M-012	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559907.1	B2M-008	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560556.1	B2M-010	472	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560681.1	B2M-009	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,220 bps, Translation length: 122 residues

Version

ENST00000559720.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415955 (version 1)

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Transcript: ENST00000559720.1 B2M-002

Summary