Transcript: ENST00000485892.1 ZNF3-014

Description

zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]

Gene Synonyms

A8-51, FLJ20216, HF.12, KOX25, PP838, Zfp113

Location

Chromosome 7: 99,672,853-99,679,326 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3034 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSG00000166526.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303915.6	ZNF3-201	3473	446aa	ENSP00000306372.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43619	C9J5S8 C9JE35 C9JIW8 C9JK31 P17036 Q86U76	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424697.1	ZNF3-202	2817	446aa	ENSP00000415358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43619	C9J5S8 C9JE35 C9JIW8 C9JK31 P17036 Q86U76	NM_032924.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299667.4	ZNF3-001	2799	446aa	ENSP00000299667.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43619	C9J5S8 C9JE35 C9JIW8 C9JK31 P17036 Q86U76	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413658.2	ZNF3-006	1441	131aa	ENSP00000399951.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43618	P17036	NM_017715.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428683.1	ZNF3-007	999	184aa	ENSP00000388042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5S8 C9JE35 C9JIW8 C9JK31	NM_001278284.1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449785.1	ZNF3-008	735	184aa	ENSP00000405970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5S8 C9JE35 C9JIW8 C9JK31	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412947.1	ZNF3-005	595	148aa	ENSP00000416088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIW8 C9JK31	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441298.1	ZNF3-009	574	98aa	ENSP00000394113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JK31	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000415068.1	ZNF3-015	543	104aa	ENSP00000416686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JE35	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000292393.5	ZNF3-013	512	20aa	ENSP00000292393.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487620.1	ZNF3-002	2660	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485892.1	ZNF3-014	722	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479192.1	ZNF3-010	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460331.1	ZNF3-012	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466121.1	ZNF3-011	522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 722 bps,

Version

ENST00000485892.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000337841 (version 1)

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Transcript: ENST00000485892.1 ZNF3-014

Summary