Transcript: ENST00000524379.1 LMO1-002

Description

LIM domain only 1 (rhombotin 1) [Source:HGNC Symbol;Acc:6641]

Gene Synonyms

RBTN1, RHOM1, TTG1

Location

About this transcript

This transcript has 4 exons, is associated with 17298 variant alleles and maps to 370 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335790.3	LMO1-001	1279	156aa	ENSP00000338207.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44534	E9PK83 P25800	NM_002315.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428101.2	LMO1-003	1038	155aa	ENSP00000404538.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58118	E9PK83 P25800	NM_001270428.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534484.1	LMO1-004	770	145aa	ENSP00000435456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK83	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524379.1	LMO1-002	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 785 bps,

Version

ENST00000524379.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000386505 (version 1)