EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

Human (GRCh37.p13)
Description

alkB, alkylation repair homolog 3 (E. coli) [Source:HGNC Symbol;Acc:30141]

Gene Synonyms

ABH3, DEPC-1, DEPC1, PCA1

Location
About this transcript

This transcript has 10 exons, is annotated with 5 domains and features, is associated with 16209 variant alleles and maps to 394 oligo probes.

Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000302708.4ALKBH3-0011474286aaENSP00000302232.4
 
Protein coding
CCDS7906E9PRD0 Q96Q83 NM_139178.3Ensembl CanonicalGENCODE basic
ENST00000378840.4ALKBH3-201918170aaENSP00000368117.4
 
Protein coding
E9PRD0 Q96Q83 -GENCODE basic
ENST00000524742.1ALKBH3-00784260aaENSP00000434229.1
 
Protein coding
E9PRD0 -CDS 3' incomplete
ENST00000529366.1ALKBH3-010747223aaENSP00000435848.1
 
Protein coding
E9PRD0 E9PSA5 -CDS 3' incomplete
ENST00000532129.1ALKBH3-012725156aaENSP00000433614.1
 
Protein coding
--CDS 5' incomplete
ENST00000530803.1ALKBH3-0021557170aaENSP00000436788.1
 
Nonsense mediated decay
E9PRD0 Q96Q83 --
ENST00000532962.1ALKBH3-0031371171aaENSP00000434832.1
 
Nonsense mediated decay
E9PN35 E9PRD0 --
ENST00000534171.1ALKBH3-00676466aaENSP00000432259.1
 
Nonsense mediated decay
E9PRD0 E9PRJ2 --
ENST00000532410.1ALKBH3-011648No protein-
 
Processed transcript
---
ENST00000533200.1ALKBH3-009517No protein-
 
Processed transcript
---
ENST00000529434.1ALKBH3-004682No protein-
 
Retained intron
---
ENST00000530754.1ALKBH3-005582No protein-
 
Retained intron
---
ENST00000527029.1ALKBH3-008569No protein-
 
Retained intron
---
Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,474 bps, Translation length: 286 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96Q83

CCDS

This transcript is a member of the Human CCDS set: CCDS7906

Version

ENST00000302708.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000389693 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.