Transcript: ENST00000255531.7 PCDH19-001

Description

protocadherin 19 [Source:HGNC Symbol;Acc:14270]

Gene Synonyms

EFMR, EIEE9, KIAA1313

Location

About this transcript

This transcript has 5 exons, is annotated with 48 domains and features, is associated with 36110 variant alleles and maps to 411 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373034.4	PCDH19-002	9756	1148aa	ENSP00000362125.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55462	Q8TAB3	NM_001184880.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000255531.7	PCDH19-001	9613	1101aa	ENSP00000255531.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43976	B3KU71 Q8TAB3	NM_020766.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420881.2	PCDH19-004	7936	1100aa	ENSP00000400327.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48141	E9PAM6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464981.1	PCDH19-003	329	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 9,613 bps, Translation length: 1,101 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAB3

CCDS

This transcript is a member of the Human CCDS set: CCDS43976

Version

ENST00000255531.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000057478 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.