Transcript: ENST00000404767.3 INTS1-001

Description

integrator complex subunit 1 [Source:HGNC Symbol;Acc:24555]

Gene Synonyms

DKFZp586J0619, INT1, KIAA1440, NET28

Location

Chromosome 7: 1,509,913-1,544,003 reverse strand.

About this transcript

This transcript has 48 exons, is annotated with 23 domains and features, is associated with 23882 variant alleles and maps to 1346 oligo probes.

Gene

This transcript is a product of gene ENSG00000164880.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000404767.3	INTS1-001	6959	2190aa	ENSP00000385722.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47526	Q8N201	NM_001080453.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389470.4	INTS1-201	7485	2394aa	ENSP00000374121.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4D212	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483196.1	INTS1-008	386	128aa	ENSP00000419206.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C582	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493531.1	INTS1-005	828	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493446.1	INTS1-007	675	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496988.1	INTS1-009	421	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468115.1	INTS1-003	3051	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482994.1	INTS1-006	498	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479671.1	INTS1-004	245	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 48, Coding exons: 47, Transcript length: 6,959 bps, Translation length: 2,190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N201

CCDS

This transcript is a member of the Human CCDS set: CCDS47526

Version

ENST00000404767.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000323683 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000404767.3 INTS1-001

Summary