Transcript: ENST00000520103.1 PEX2-003

Description

peroxisomal biogenesis factor 2 [Source:HGNC Symbol;Acc:9717]

Gene Synonyms

PAF-1, PAF1, PBD5A, PBD5B, PMP3, PMP35, PXMP3, RNF72, ZWS3

Location

Chromosome 8: 77,895,170-77,913,183 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 8517 variant alleles and maps to 273 oligo probes.

Gene

This transcript is a product of gene ENSG00000164751.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000419564.2	PEX2-201	4386	305aa	ENSP00000400984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6221	E5RIW9 P28328	NM_001172087.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357039.4	PEX2-001	4317	305aa	ENSP00000349543.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6221	E5RIW9 P28328	NM_001172087.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522527.1	PEX2-002	1627	305aa	ENSP00000428638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6221	E5RIW9 P28328	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520103.1	PEX2-003	1470	305aa	ENSP00000428590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6221	E5RIW9 P28328	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518986.1	PEX2-006	700	179aa	ENSP00000429304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIW9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519956.1	PEX2-004	473	3aa	ENSP00000429740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_001172086.1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520203.1	PEX2-005	688	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 1,470 bps, Translation length: 305 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28328

CCDS

This transcript is a member of the Human CCDS set: CCDS6221

Version

ENST00000520103.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000379123 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000520103.1 PEX2-003

Summary