Transcript: ENST00000467931.1 COL1A2-006

Description

collagen, type I, alpha 2 [Source:HGNC Symbol;Acc:2198]

Gene Synonyms

OI4

Location

Chromosome 7: 94,048,765-94,050,358 forward strand.

About this transcript

This transcript has 4 exons, is associated with 927 variant alleles and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSG00000164692.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297268.6	COL1A2-001	5411	1366aa	ENSP00000297268.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34682	A2TIK1 P08123 Q75N18	NM_000089.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481570.1	COL1A2-002	5993	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464916.1	COL1A2-003	1123	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497316.1	COL1A2-004	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478215.1	COL1A2-009	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473573.1	COL1A2-007	828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461525.1	COL1A2-005	776	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467931.1	COL1A2-006	713	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469732.1	COL1A2-008	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492110.1	COL1A2-010	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488298.1	COL1A2-012	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488121.1	COL1A2-011	380	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 713 bps,

Version

ENST00000467931.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000309050 (version 1)

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Transcript: ENST00000467931.1 COL1A2-006

Summary