Transcript: ENST00000520464.1 CREBRF-005

Description

CREB3 regulatory factor [Source:HGNC Symbol;Acc:24050]

Gene Synonyms

C5orf41, LRF

Location

Chromosome 5: 172,483,393-172,551,584 forward strand.

About this transcript

This transcript has 7 exons, is associated with 30437 variant alleles and maps to 337 oligo probes.

Gene

This transcript is a product of gene ENSG00000164463.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296953.2	CREBRF-001	7778	639aa	ENSP00000296953.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34293	B3KV47 E5RI19 Q8IUR6	NM_153607.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540014.1	CREBRF-201	7788	641aa	ENSP00000440075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RI19 I6L8F1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522692.1	CREBRF-003	2466	417aa	ENSP00000431107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54948	E5RI19 Q8IUR6	NM_001168394.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520420.1	CREBRF-004	1660	417aa	ENSP00000428290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54948	E5RI19 Q8IUR6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523161.1	CREBRF-008	559	26aa	ENSP00000430801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RI19	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517882.1	CREBRF-007	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520464.1	CREBRF-005	5163	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 5,163 bps,

Version

ENST00000520464.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000372671 (version 2)

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Transcript: ENST00000520464.1 CREBRF-005

Summary