Transcript: ENST00000511837.1 PITX2-006

Description

paired-like homeodomain 2 [Source:HGNC Symbol;Acc:9005]

Gene Synonyms

ARP1, Brx1, IDG2, IGDS, IGDS2, IHG2, IRID2, Otlx2, PTX2, RGS, RIEG, RIEG1, RS

Location

Chromosome 4: 111,539,365-111,563,279 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 11354 variant alleles and maps to 297 oligo probes.

Gene

This transcript is a product of gene ENSG00000164093.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306732.3	PITX2-005	2320	324aa	ENSP00000304169.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3694	Q99697	NM_000325.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354925.2	PITX2-003	3359	317aa	ENSP00000347004.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3692	D6RFI4 Q99697	NM_001204397.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355080.5	PITX2-002	2100	271aa	ENSP00000347192.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3693	D6RBG8 Q99697	NM_153427.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394598.2	PITX2-001	1906	317aa	ENSP00000378097.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3692	D6RFI4 Q99697	NM_153426.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557119.2	PITX2-010	1889	264aa	ENSP00000475617.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQ81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394595.3	PITX2-004	1693	174aa	ENSP00000378095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MUL9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511837.1	PITX2-006	1085	290aa	ENSP00000421454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFI4	NM_001204398.1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511990.1	PITX2-007	463	118aa	ENSP00000424142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556049.1	PITX2-008	941	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000607868.1	PITX2-011	1398	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,085 bps, Translation length: 290 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000511837.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363854 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000511837.1 PITX2-006

Summary