Transcript: ENST00000468913.2 C1orf50-007

Description

chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:28795]

Gene Synonyms

MGC955

Location

Chromosome 1: 43,235,349-43,241,099 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2271 variant alleles and maps to 407 oligo probes.

Gene

This transcript is a product of gene ENSG00000164008.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372525.5	C1orf50-001	996	199aa	ENSP00000361603.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS473	Q9BV19	NM_024097.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536543.1	C1orf50-201	1558	229aa	ENSP00000438814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YFI9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421630.1	C1orf50-005	769	232aa	ENSP00000398292.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_001242750.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000605272.1	C1orf50-009	516	165aa	ENSP00000473838.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000438946.2	C1orf50-006	425	128aa	ENSP00000415739.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000603943.1	C1orf50-008	1011	109aa	ENSP00000473874.1	Nonsense mediated decay		B4DSR2	-	-
ENST00000464081.1	C1orf50-004	825	42aa	ENSP00000473339.1	Nonsense mediated decay		R4GMT4	-	-
ENST00000468913.2	C1orf50-007	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494155.1	C1orf50-003	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 589 bps,

Version

ENST00000468913.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000020007 (version 3)

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Transcript: ENST00000468913.2 C1orf50-007

Summary