Transcript: ENST00000470173.1 BAP1-016

Description

BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) [Source:HGNC Symbol;Acc:950]

Gene Synonyms

HUCEP-13, KIAA0272, UCHL2, hucep-6

Location

Chromosome 3: 52,441,195-52,443,799 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 3632 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSG00000163930.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000460680.1	BAP1-001	3937	729aa	ENSP00000417132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2853	C9J7L9 F8WEY5 Q92560	NM_004656.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000296288.5	BAP1-010	3434	711aa	ENSP00000296288.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7L9 F8W6N3 F8WEY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469613.1	BAP1-015	1654	129aa	ENSP00000418320.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478368.1	BAP1-014	1234	253aa	ENSP00000420647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI37 H0Y8E8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000470173.1	BAP1-016	578	112aa	ENSP00000417776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7L9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490917.1	BAP1-004	521	41aa	ENSP00000419709.1	Nonsense mediated decay		F8WEY5	-	-
ENST00000466093.1	BAP1-013	1127	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471532.1	BAP1-005	1052	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490804.1	BAP1-008	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483984.1	BAP1-009	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 578 bps, Translation length: 112 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000470173.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351154 (version 1)

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Transcript: ENST00000470173.1 BAP1-016

Summary