Transcript: ENST00000442240.1 SUCLG1-005

Description

succinate-CoA ligase, alpha subunit [Source:HGNC Symbol;Acc:11449]

Gene Synonyms

GALPHA, MTDPS9, SUCLA1, tmp_locus_1

Location

Chromosome 2: 84,668,203-84,686,385 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 7744 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSG00000163541.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393868.2	SUCLG1-001	1475	346aa	ENSP00000377446.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1967	P53597 Q6IAL5	NM_003849.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442240.1	SUCLG1-005	568	105aa	ENSP00000403884.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491123.1	SUCLG1-008	1073	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491642.1	SUCLG1-003	717	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483605.1	SUCLG1-004	655	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000430989.1	SUCLG1-006	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488234.1	SUCLG1-007	275	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484365.1	SUCLG1-002	1765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487809.1	SUCLG1-009	762	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 568 bps, Translation length: 105 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000442240.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328449 (version 3)

Annotation Attributes

dotter confirmed [Definitions]

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000442240.1 SUCLG1-005

Summary