Transcript: ENST00000510909.1 GABRB1-003

Description

gamma-aminobutyric acid (GABA) A receptor, beta 1 [Source:HGNC Symbol;Acc:4081]

Location

Chromosome 4: 47,033,650-47,405,402 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 172942 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSG00000163288.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295454.3	GABRB1-001	2143	474aa	ENSP00000295454.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3474	D6REM0 P18505	NM_000812.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538619.1	GABRB1-201	1498	404aa	ENSP00000440330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXV5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513567.1	GABRB1-005	576	117aa	ENSP00000426753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REM0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510909.1	GABRB1-003	563	87aa	ENSP00000426766.1	Nonsense mediated decay		D6REL3	-	-
ENST00000509366.1	GABRB1-004	605	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000381582.3	GABRB1-002	840	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 563 bps, Translation length: 87 residues

Version

ENST00000510909.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361114 (version 2)

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Transcript: ENST00000510909.1 GABRB1-003

Summary