Transcript: ENST00000394961.2 SMARCAD1-007

Description

SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:18398]

Gene Synonyms

ADERM, DKFZP762K2015, ETL1, HEL1, KIAA1122

Location

Chromosome 4: 95,129,235-95,211,050 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 1 domain and feature, is associated with 36820 variant alleles and maps to 701 oligo probes.

Gene

This transcript is a product of gene ENSG00000163104.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359052.4	SMARCAD1-005	5017	1028aa	ENSP00000351947.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47101	Q9H4L7	NM_001128430.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000354268.4	SMARCAD1-002	4912	1026aa	ENSP00000346217.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3639	Q9H4L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457823.2	SMARCAD1-001	4649	1028aa	ENSP00000415576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47101	Q9H4L7	NM_020159.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509418.1	SMARCAD1-006	2348	596aa	ENSP00000423286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58914	Q9H4L7	NM_001254949.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394961.2	SMARCAD1-007	3778	70aa	ENSP00000378413.2	Nonsense mediated decay		F8W9M2	-	-
ENST00000510105.1	SMARCAD1-004	2409	244aa	ENSP00000424624.1	Nonsense mediated decay		D6RAY8	-	-
ENST00000506089.1	SMARCAD1-009	554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514232.1	SMARCAD1-003	444	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 2, Transcript length: 3,778 bps, Translation length: 70 residues

Version

ENST00000394961.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000364264 (version 2)

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Transcript: ENST00000394961.2 SMARCAD1-007

Summary