Transcript: ENST00000368124.4 CADM3-002

Description

cell adhesion molecule 3 [Source:HGNC Symbol;Acc:17601]

Gene Synonyms

BIgR, FLJ10698, IGSF4B, NECL1, Necl-1, SYNCAM3, SynCAM3, TSLL1, synCAM3

Location

About this transcript

This transcript has 10 exons, is annotated with 26 domains and features, is associated with 13309 variant alleles and maps to 613 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368124.4	CADM3-002	2546	432aa	ENSP00000357106.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1182	Q8N126	NM_021189.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368125.4	CADM3-001	3745	398aa	ENSP00000357107.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44251	Q8N126	NM_001127173.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416746.1	CADM3-004	711	234aa	ENSP00000387802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N126	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497636.1	CADM3-003	870	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,546 bps, Translation length: 432 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N126

CCDS

This transcript is a member of the Human CCDS set: CCDS1182

Version

ENST00000368124.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000090331 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.