Transcript: ENST00000589919.1 SRSF2-017

Description

serine/arginine-rich splicing factor 2 [Source:HGNC Symbol;Acc:10783]

Gene Synonyms

MIRN636, PR264, SC-35, SC35, SFRS2, SFRS2A, SRp30b, hsa-mir-636

Location

Chromosome 17: 74,730,385-74,732,090 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 866 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSG00000161547.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392485.2	SRSF2-003	2885	221aa	ENSP00000376276.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11749	B3KUY1 Q01130	NM_003016.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359995.5	SRSF2-001	1927	221aa	ENSP00000353089.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11749	B3KUY1 Q01130	NM_001195427.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508921.3	SRSF2-002	1390	209aa	ENSP00000441780.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DN89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358156.6	SRSF2-007	572	133aa	ENSP00000350877.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KP15	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583836.1	SRSF2-008	561	130aa	ENSP00000463317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL05	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585202.1	SRSF2-004	1359	221aa	ENSP00000462425.1	Nonsense mediated decay	CCDS11749	B3KUY1 Q01130	-	-
ENST00000452355.3	SRSF2-005	1357	221aa	ENSP00000391278.3	Nonsense mediated decay	CCDS11749	B3KUY1 Q01130	-	-
ENST00000582449.1	SRSF2-006	1518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586778.1	SRSF2-016	1001	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589919.1	SRSF2-017	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592676.1	SRSF2-015	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 595 bps,

Version

ENST00000589919.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451363 (version 1)

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Transcript: ENST00000589919.1 SRSF2-017

Summary