Transcript: ENST00000356046.2 GRHL3-001

Description

grainyhead-like 3 (Drosophila) [Source:HGNC Symbol;Acc:25839]

Gene Synonyms

SOM, TFCP2L4

Location

Chromosome 1: 24,646,056-24,681,808 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 5 domains and features, is associated with 15036 variant alleles and maps to 485 oligo probes.

Gene

This transcript is a product of gene ENSG00000158055.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000350501.5	GRHL3-002	2119	626aa	ENSP00000288955.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS252	E9PLT6 Q8TE85	NM_198174.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361548.4	GRHL3-005	2869	602aa	ENSP00000354943.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44088	E9PLT6 Q8TE85 Q9NST3	NM_198173.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356046.2	GRHL3-001	2804	556aa	ENSP00000348333.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53284	E9PLT6 Q8TE85 Q9NST3	NM_001195010.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342072.4	GRHL3-201	2799	509aa	ENSP00000340543.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8TE85 Q9NST3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000236255.4	GRHL3-003	1870	607aa	ENSP00000236255.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS251	E9PLT6 Q8TE85 Q9NST3	NM_021180.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524724.1	GRHL3-008	494	81aa	ENSP00000431290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLT6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528064.1	GRHL3-006	1683	52aa	ENSP00000435130.1	Nonsense mediated decay		E9PLG9	-	-
ENST00000530984.1	GRHL3-007	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461318.1	GRHL3-004	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528181.1	GRHL3-009	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 2,804 bps, Translation length: 556 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TE85

CCDS

This transcript is a member of the Human CCDS set: CCDS53284

Version

ENST00000356046.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000008411 (version 5)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000356046.2 GRHL3-001

Summary