Transcript: ENST00000560601.1 ACAN-005

Description

aggrecan [Source:HGNC Symbol;Acc:319]

Gene Synonyms

AGC1, AGCAN, CSPG1, CSPGCP, MSK16, SEDK

Location

Chromosome 15: 89,402,307-89,414,721 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 5531 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSG00000157766.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000439576.2	ACAN-201	8840	2530aa	ENSP00000387356.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53970	E7EX88 Q6LE94	NM_013227.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559004.1	ACAN-008	7628	2492aa	ENSP00000453499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561243.1	ACAN-006	7593	2530aa	ENSP00000453342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53970	E7EX88 Q6LE94	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352105.7	ACAN-004	7526	2431aa	ENSP00000341615.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53971	E7ENV9	NM_001135.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558207.1	ACAN-001	4159	721aa	ENSP00000453003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6PID9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558704.1	ACAN-003	712	156aa	ENSP00000452682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560601.1	ACAN-005	679	226aa	ENSP00000453581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6LE94	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000558604.1	ACAN-002	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 679 bps, Translation length: 226 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000560601.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000416268 (version 2)

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Transcript: ENST00000560601.1 ACAN-005

Summary