Transcript: ENST00000287957.3 GATAD1-001

Description

GATA zinc finger domain containing 1 [Source:HGNC Symbol;Acc:29941]

Gene Synonyms

CMD2B, FLJ22489, ODAG, RG083M05.2

Location

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 5018 variant alleles and maps to 642 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287957.3	GATAD1-001	3361	269aa	ENSP00000287957.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5625	Q8WUU5	NM_021167.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493878.1	GATAD1-002	2017	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465247.1	GATAD1-004	797	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 3,361 bps, Translation length: 269 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WUU5

CCDS

This transcript is a member of the Human CCDS set: CCDS5625

Version

ENST00000287957.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253929 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.