Transcript: ENST00000477748.1 PDE6D-002

Description

phosphodiesterase 6D, cGMP-specific, rod, delta [Source:HGNC Symbol;Acc:8788]

Gene Synonyms

PDED, tmp_locus_12

Location

About this transcript

This transcript has 2 exons, is associated with 1192 variant alleles and maps to 151 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287600.4	PDE6D-001	1175	150aa	ENSP00000287600.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33398	C9IZ52 O43924 Q6IB24	NM_002601.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409772.1	PDE6D-005	672	93aa	ENSP00000387108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428104.2	PDE6D-004	627	104aa	ENSP00000399098.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477748.1	PDE6D-002	996	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486044.1	PDE6D-006	1005	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 996 bps,

Version

ENST00000477748.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000332408 (version 1)