Transcript: ENST00000287600.4 PDE6D-001

Description

phosphodiesterase 6D, cGMP-specific, rod, delta [Source:HGNC Symbol;Acc:8788]

Gene Synonyms

PDED, tmp_locus_12

Location

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 19809 variant alleles and maps to 331 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287600.4	PDE6D-001	1175	150aa	ENSP00000287600.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33398	C9IZ52 O43924 Q6IB24	NM_002601.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409772.1	PDE6D-005	672	93aa	ENSP00000387108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428104.2	PDE6D-004	627	104aa	ENSP00000399098.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZ52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477748.1	PDE6D-002	996	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486044.1	PDE6D-006	1005	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,175 bps, Translation length: 150 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43924

CCDS

This transcript is a member of the Human CCDS set: CCDS33398

Version

ENST00000287600.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000332407 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.