Transcript: ENST00000504452.1 PRDM8-003

Description

PR domain containing 8 [Source:HGNC Symbol;Acc:13993]

Gene Synonyms

PFM5

Location

Chromosome 4: 81,105,439-81,125,483 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 26 domains and features, is associated with 10457 variant alleles and maps to 524 oligo probes.

Gene

This transcript is a product of gene ENSG00000152784.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339711.4	PRDM8-201	4095	689aa	ENSP00000339764.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43243	E9PEH0 Q05CA1 Q9NQV8	NM_020226.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504452.1	PRDM8-003	3706	689aa	ENSP00000423985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43243	E9PEH0 Q05CA1 Q9NQV8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415738.2	PRDM8-001	3124	689aa	ENSP00000406998.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43243	E9PEH0 Q05CA1 Q9NQV8	NM_001099403.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515013.1	PRDM8-004	2514	427aa	ENSP00000425149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEH0 Q05CA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508061.2	PRDM8-010	783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511825.1	PRDM8-009	677	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508965.1	PRDM8-005	649	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507025.1	PRDM8-011	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509375.1	PRDM8-006	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506547.1	PRDM8-008	395	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 3,706 bps, Translation length: 689 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQV8

CCDS

This transcript is a member of the Human CCDS set: CCDS43243

Version

ENST00000504452.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362793 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000504452.1 PRDM8-003

Summary