Transcript: ENST00000500337.2 C5orf28-003

Description

chromosome 5 open reading frame 28 [Source:HGNC Symbol;Acc:26139]

Gene Synonyms

FLJ21657

Location

Chromosome 5: 43,444,354-43,483,938 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 17516 variant alleles and maps to 466 oligo probes.

Gene

This transcript is a product of gene ENSG00000151881.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000500337.2	C5orf28-003	2950	215aa	ENSP00000426067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3945	D6RAV6 Q0VDI3 Q6GMT5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397080.3	C5orf28-001	2338	215aa	ENSP00000380270.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3945	D6RAV6 Q0VDI3 Q6GMT5	NM_022483.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537319.1	C5orf28-201	2285	84aa	ENSP00000443629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6GMT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512085.1	C5orf28-002	1927	215aa	ENSP00000422881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3945	D6RAV6 Q0VDI3 Q6GMT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506860.1	C5orf28-006	736	176aa	ENSP00000424720.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510130.1	C5orf28-004	721	113aa	ENSP00000427099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBX6 Q6GMT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511525.1	C5orf28-005	629	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 2,950 bps, Translation length: 215 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q0VDI3

CCDS

This transcript is a member of the Human CCDS set: CCDS3945

Version

ENST00000500337.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368003 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000500337.2 C5orf28-003

Summary