Transcript: ENST00000278865.3 MS4A3-001

Description

membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) [Source:HGNC Symbol;Acc:7317]

Gene Synonyms

CD20L, HTM4

Location

Chromosome 11: 59,824,156-59,838,601 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 6263 variant alleles and maps to 355 oligo probes.

Gene

This transcript is a product of gene ENSG00000149516.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278865.3	MS4A3-001	1613	214aa	ENSP00000278865.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31567	Q96HJ5	NM_006138.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358152.2	MS4A3-201	1516	168aa	ENSP00000350872.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31568	Q96HJ5	NM_001031809.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395032.2	MS4A3-003	867	91aa	ENSP00000378473.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41651	Q96HJ5	NM_001031666.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534744.1	MS4A3-002	507	168aa	ENSP00000434117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31568	Q96HJ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525686.1	MS4A3-005	746	83aa	ENSP00000434109.1	Nonsense mediated decay		E9PRW8	-	-
ENST00000526199.1	MS4A3-008	394	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528952.1	MS4A3-006	923	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528298.1	MS4A3-004	486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,613 bps, Translation length: 214 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96HJ5

CCDS

This transcript is a member of the Human CCDS set: CCDS31567

Version

ENST00000278865.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000394417 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000278865.3 MS4A3-001

Summary