Transcript: ENST00000276480.7 ST18-001

Description

suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein) [Source:HGNC Symbol;Acc:18695]

Gene Synonyms

KIAA0535, ZC2HC10, ZNF387

Location

Chromosome 8: 53,023,399-53,322,303 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 20 domains and features, is associated with 130487 variant alleles and maps to 784 oligo probes.

Gene

This transcript is a product of gene ENSG00000147488.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000276480.7	ST18-001	6187	1047aa	ENSP00000276480.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6149	E5RHS3 O60284	NM_014682.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517580.1	ST18-002	2579	620aa	ENSP00000428521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHS3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519118.1	ST18-015	629	12aa	ENSP00000428096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522251.1	ST18-008	3963	41aa	ENSP00000428920.1	Nonsense mediated decay		E5RFE8	-	-
ENST00000521582.1	ST18-006	3928	364aa	ENSP00000430763.1	Nonsense mediated decay		E5RID0	-	-
ENST00000521824.1	ST18-007	3870	94aa	ENSP00000429579.1	Nonsense mediated decay		E5RHY1	-	-
ENST00000522102.1	ST18-003	4739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521549.1	ST18-005	955	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517456.1	ST18-017	818	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518037.1	ST18-016	808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520257.1	ST18-023	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524183.1	ST18-011	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520716.1	ST18-009	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518545.1	ST18-014	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518501.1	ST18-018	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519201.1	ST18-012	540	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520811.1	ST18-010	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524078.1	ST18-004	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518053.1	ST18-019	725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520279.1	ST18-021	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521119.1	ST18-013	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518453.1	ST18-022	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522861.1	ST18-020	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523652.1	ST18-024	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 20, Transcript length: 6,187 bps, Translation length: 1,047 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60284

CCDS

This transcript is a member of the Human CCDS set: CCDS6149

Version

ENST00000276480.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377867 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000276480.7 ST18-001

Summary