Transcript: ENST00000275815.3 EPHA1-001

Description

EPH receptor A1 [Source:HGNC Symbol;Acc:3385]

Gene Synonyms

EPH, EPHT, EPHT1

Location

Chromosome 7: 143,088,205-143,105,985 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 45 domains and features, is associated with 8590 variant alleles and maps to 651 oligo probes.

Gene

This transcript is a product of gene ENSG00000146904.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000275815.3	EPHA1-001	3363	976aa	ENSP00000275815.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5884	P21709	NM_005232.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458129.1	EPHA1-008	651	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488068.1	EPHA1-002	2922	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497891.1	EPHA1-003	820	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494989.1	EPHA1-005	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465208.1	EPHA1-006	686	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479459.1	EPHA1-004	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,363 bps, Translation length: 976 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P21709

CCDS

This transcript is a member of the Human CCDS set: CCDS5884

Version

ENST00000275815.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000342154 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000275815.3 EPHA1-001

Summary