Transcript: ENST00000389531.3 SDK1-004

Description

sidekick cell adhesion molecule 1 [Source:HGNC Symbol;Acc:19307]

Gene Synonyms

FLJ31425

Location

Chromosome 7: 3,341,219-4,306,040 forward strand.

About this transcript

This transcript has 44 exons, is annotated with 109 domains and features, is associated with 606781 variant alleles and maps to 1178 oligo probes.

Gene

This transcript is a product of gene ENSG00000146555.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000404826.2	SDK1-001	10397	2213aa	ENSP00000385899.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34590	Q7Z5N4	NM_152744.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389531.3	SDK1-004	7606	2193aa	ENSP00000374182.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6X9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426596.1	SDK1-006	554	107aa	ENSP00000404118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466611.1	SDK1-003	2108	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481856.1	SDK1-008	433	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476701.1	SDK1-002	3113	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467827.1	SDK1-009	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478527.1	SDK1-005	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484011.1	SDK1-007	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 7,606 bps, Translation length: 2,193 residues

Version

ENST00000389531.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000323705 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000389531.3 SDK1-004

Summary