Transcript: ENST00000271628.8 SF3B4-001

Description

splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771]

Gene Synonyms

AFD1, Hsh49, SAP49, SF3b49

Location

About this transcript

This transcript has 6 exons, is annotated with 17 domains and features, is associated with 2522 variant alleles and maps to 562 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000271628.8	SF3B4-001	2085	424aa	ENSP00000271628.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS941	Q15427 Q5SZ64	NM_005850.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457312.1	SF3B4-002	826	190aa	ENSP00000391114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZ64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,085 bps, Translation length: 424 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15427

CCDS

This transcript is a member of the Human CCDS set: CCDS941

Version

ENST00000271628.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000033753 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.