Transcript: ENST00000473280.1 SYTL1-008

Description

synaptotagmin-like 1 [Source:HGNC Symbol;Acc:15584]

Gene Synonyms

FLJ14996, JFC1, SLP1, exophilin-7

Location

Chromosome 1: 27,669,719-27,673,949 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 1767 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSG00000142765.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543823.1	SYTL1-201	2229	562aa	ENSP00000440704.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53286	Q5SSC6 Q8IYJ3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000318074.5	SYTL1-001	1898	550aa	ENSP00000316464.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS298	Q5SSC6 Q8IYJ3	NM_032872.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473280.1	SYTL1-008	312	76aa	ENSP00000420110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SSC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490170.1	SYTL1-004	2681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483926.1	SYTL1-003	2525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475199.1	SYTL1-005	2235	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485269.1	SYTL1-007	895	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496001.1	SYTL1-006	876	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 312 bps, Translation length: 76 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000473280.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000096879 (version 1)

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Transcript: ENST00000473280.1 SYTL1-008

Summary