Transcript: ENST00000389995.4 SOD1-002

Description

superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179]

Gene Synonyms

ALS, ALS1, HEL-S-44, IPOA, SOD, hSod1, homodimer

Location

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 5071 variant alleles and maps to 314 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000270142.6	SOD1-001	966	154aa	ENSP00000270142.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33536	P00441	NM_000454.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389995.4	SOD1-002	865	135aa	ENSP00000374645.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYH4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470944.1	SOD1-003	1746	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476106.1	SOD1-004	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 865 bps, Translation length: 135 residues

Version

ENST00000389995.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000192586 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.